HL_7NFX_055

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7NFX|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_055 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0983

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7NFX|1|5|U|3796
7NFX|1|5|C|3797
7NFX|1|5|U|3798
7NFX|1|5|A|3799
7NFX|1|5|A|3800
7NFX|1|5|U|3801
7NFX|1|5|U|3802
7NFX|1|5|A|3803
7NFX|1|5|G|3804

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain V

Ribosomal protein L23