HL_7NHL_074

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_074 not in the Motif Atlas

Homologous match to HL_6UFM_002

Geometric discrepancy: 0.1261

The information below is about HL_6UFM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

7NHL|1|D|G|32
7NHL|1|D|C|33
7NHL|1|D|U|34
7NHL|1|D|C|35
7NHL|1|D|A|36
7NHL|1|D|U|37
7NHL|1|D|A|38
7NHL|1|D|A|39
7NHL|1|D|C|40

Current chains

Chain D

P-tRNA fMet

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain b

RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')

Chain j

30S ribosomal protein S9