HL_7NHL_099

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7NHL|1|a|G|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_099 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1479

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

7NHL|1|a|G|1101
7NHL|1|a|U|1102
7NHL|1|a|U|1103
7NHL|1|a|A|1104
7NHL|1|a|A|1105
7NHL|1|a|G|1106
7NHL|1|a|U|1107
7NHL|1|a|C|1108

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S2