HL_7NHL_100

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUAAGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_100 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.2628

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

7NHL|1|a|A|1145
7NHL|1|a|U|1146
7NHL|1|a|U|1147
7NHL|1|a|A|1148
7NHL|1|a|A|1149
7NHL|1|a|G|1150
7NHL|1|a|U|1151
7NHL|1|a|U|1152

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

30S ribosomal protein S9