HL_7NHM_098

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUAAGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_098 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.2559

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7NHM|1|a|A|1145
7NHM|1|a|U|1146
7NHM|1|a|U|1147
7NHM|1|a|A|1148
7NHM|1|a|A|1149
7NHM|1|a|G|1150
7NHM|1|a|U|1151
7NHM|1|a|U|1152

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

30S ribosomal protein S10