HL_7NQH_009

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGUAAAAAG

Length

10 nucleotides

Bulged bases

7NQH|1|AA|U|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NQH_009 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.2265

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7NQH|1|AA|C|342
7NQH|1|AA|U|343
7NQH|1|AA|G|344
7NQH|1|AA|U|345
7NQH|1|AA|A|346
7NQH|1|AA|A|347
7NQH|1|AA|A|348
7NQH|1|AA|A|349
7NQH|1|AA|A|350
7NQH|1|AA|G|351

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

28S ribosomal protein S7, mitochondrial

Chain AK

uS11m

Chain AU

bS21m