HL_7NRC_020

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7NRC|1|LA|U|879, 7NRC|1|LA|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0717

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7NRC|1|LA|A|876
7NRC|1|LA|C|877
7NRC|1|LA|G|878
7NRC|1|LA|U|879
7NRC|1|LA|G|880
7NRC|1|LA|C|881
7NRC|1|LA|A|882
7NRC|1|LA|A|883
7NRC|1|LA|A|884
7NRC|1|LA|U|885

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein L17-A

Chain Ll

60S ribosomal protein L37-A