HL_7NRC_024

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

7NRC|1|LA|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1467

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7NRC|1|LA|C|1076
7NRC|1|LA|U|1077
7NRC|1|LA|U|1078
7NRC|1|LA|A|1079
7NRC|1|LA|A|1080
7NRC|1|LA|U|1081
7NRC|1|LA|U|1082
7NRC|1|LA|G|1083

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LG

60S ribosomal protein L5

Chain LV

60S ribosomal protein L21-A

Chain Ld

60S ribosomal protein L29