HL_7NRC_046

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

7NRC|1|LA|A|2138, 7NRC|1|LA|A|2139, 7NRC|1|LA|U|2140, 7NRC|1|LA|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_046 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.0896

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7NRC|1|LA|U|2135
7NRC|1|LA|C|2136
7NRC|1|LA|U|2137
7NRC|1|LA|A|2138
7NRC|1|LA|A|2139
7NRC|1|LA|U|2140
7NRC|1|LA|U|2141
7NRC|1|LA|A|2142
7NRC|1|LA|A|2143
7NRC|1|LA|A|2144
7NRC|1|LA|A|2145

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Ll

60S ribosomal protein L37-A