HL_7NRC_049
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 7NRC|1|LA|A|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_049 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.1121
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NRC|1|LA|G|2253
7NRC|1|LA|U|2254
7NRC|1|LA|A|2255
7NRC|1|LA|A|2256
7NRC|1|LA|C|2257
7NRC|1|LA|U|2258
7NRC|1|LA|A|2259
7NRC|1|LA|U|2260
7NRC|1|LA|G|2261
7NRC|1|LA|A|2262
7NRC|1|LA|C|2263
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Sl
- RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3')
- Chain Sm
- Transfer RNA; tRNA
- Chain Sn
- Transfer RNA; tRNA
Coloring options: