HL_7NRC_050

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7NRC|1|LA|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.113

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7NRC|1|LA|U|2292
7NRC|1|LA|C|2293
7NRC|1|LA|U|2294
7NRC|1|LA|A|2295
7NRC|1|LA|A|2296
7NRC|1|LA|U|2297
7NRC|1|LA|U|2298
7NRC|1|LA|A|2299
7NRC|1|LA|G|2300

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LX

60S ribosomal protein L23-A

Chain S2

Small subunit ribosomal RNA; SSU rRNA