HL_7NRC_075
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 7NRC|1|LC|A|80, 7NRC|1|LC|C|84, 7NRC|1|LC|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_075 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2293
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7NRC|1|LC|U|69
7NRC|1|LC|G|70
7NRC|1|LC|A|71
7NRC|1|LC|A|72
7NRC|1|LC|U|73
7NRC|1|LC|U|74
7NRC|1|LC|G|75
7NRC|1|LC|C|76
7NRC|1|LC|A|77
7NRC|1|LC|G|78
7NRC|1|LC|A|79
7NRC|1|LC|A|80
7NRC|1|LC|U|81
7NRC|1|LC|U|82
7NRC|1|LC|C|83
7NRC|1|LC|C|84
7NRC|1|LC|G|85
7NRC|1|LC|U|86
7NRC|1|LC|G|87
7NRC|1|LC|A|88
7NRC|1|LC|A|89
Current chains
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- 60S ribosomal protein L26-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: