HL_7NRC_085

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7NRC|1|S2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_085 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1443

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7NRC|1|S2|G|330
7NRC|1|S2|A|331
7NRC|1|S2|U|332
7NRC|1|S2|A|333
7NRC|1|S2|G|334
7NRC|1|S2|U|335
7NRC|1|S2|G|336
7NRC|1|S2|G|337
7NRC|1|S2|C|338

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SV

40S ribosomal protein S8-A

Chain SX

40S ribosomal protein S11-A