HL_7NRC_097
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- 7NRC|1|S2|U|836
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_097 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.3995
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7NRC|1|S2|A|829
7NRC|1|S2|U|830
7NRC|1|S2|U|831
7NRC|1|S2|U|832
7NRC|1|S2|U|833
7NRC|1|S2|G|834
7NRC|1|S2|U|835
7NRC|1|S2|U|836
7NRC|1|S2|G|837
7NRC|1|S2|G|838
7NRC|1|S2|U|839
7NRC|1|S2|U|840
7NRC|1|S2|U|841
7NRC|1|S2|C|842
7NRC|1|S2|U|843
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SX
- 40S ribosomal protein S11-A
Coloring options: