HL_7NRC_105

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7NRC|1|S2|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_105 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2782

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7NRC|1|S2|A|1238
7NRC|1|S2|U|1239
7NRC|1|S2|U|1240
7NRC|1|S2|G|1241
7NRC|1|S2|A|1242
7NRC|1|S2|G|1243
7NRC|1|S2|A|1244
7NRC|1|S2|G|1245
7NRC|1|S2|C|1246
7NRC|1|S2|U|1247

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SE

40S ribosomal protein S15

Chain SM

40S ribosomal protein S29-A

Chain SN

40S ribosomal protein S31