HL_7NRC_108

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_108 not in the Motif Atlas

Homologous match to HL_4V88_216

Geometric discrepancy: 0.4816

The information below is about HL_4V88_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36540.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NRC|1|S2|C|1359
7NRC|1|S2|A|1360
7NRC|1|S2|U|1361
7NRC|1|S2|U|1362
7NRC|1|S2|U|1363
7NRC|1|S2|G|1364

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain A

GCN1

Chain SB

40S ribosomal protein S5

Chain SF

40S ribosomal protein S16-A

Chain SI

40S ribosomal protein S19-A