HL_7NRD_004

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

7NRD|1|LA|U|133, 7NRD|1|LA|C|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1149

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

7NRD|1|LA|C|132
7NRD|1|LA|U|133
7NRD|1|LA|U|134
7NRD|1|LA|C|135
7NRD|1|LA|G|136

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LP

60S ribosomal protein L15-A

Chain Lj

60S ribosomal protein L35-A