HL_7NRD_007

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7NRD|1|LA|G|218, 7NRD|1|LA|A|219, 7NRD|1|LA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.1263

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7NRD|1|LA|G|216
7NRD|1|LA|U|217
7NRD|1|LA|G|218
7NRD|1|LA|A|219
7NRD|1|LA|G|220
7NRD|1|LA|A|221
7NRD|1|LA|A|222
7NRD|1|LA|U|223
7NRD|1|LA|C|224

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A