HL_7NRD_014

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7NRD|1|LA|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1609

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7NRD|1|LA|U|640
7NRD|1|LA|C|641
7NRD|1|LA|U|642
7NRD|1|LA|U|643
7NRD|1|LA|G|644
7NRD|1|LA|A|645
7NRD|1|LA|A|646
7NRD|1|LA|A|647
7NRD|1|LA|C|648
7NRD|1|LA|A|649

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lc

60S ribosomal protein L28

Chain Lg

60S ribosomal protein L32