HL_7NRD_022

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7NRD|1|LA|C|959, 7NRD|1|LA|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_022 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.3006

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7NRD|1|LA|C|958
7NRD|1|LA|C|959
7NRD|1|LA|U|960
7NRD|1|LA|C|961
7NRD|1|LA|A|962
7NRD|1|LA|G|963

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lc

60S ribosomal protein L28

Chain Ld

60S ribosomal protein L29

Chain Lq

60S ribosomal protein L42-A