HL_7NRD_029
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 7NRD|1|LA|G|1354, 7NRD|1|LA|U|1356
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_029 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.5689
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7NRD|1|LA|U|1347
7NRD|1|LA|U|1348
7NRD|1|LA|G|1349
7NRD|1|LA|A|1350
7NRD|1|LA|U|1351
7NRD|1|LA|A|1352
7NRD|1|LA|U|1353
7NRD|1|LA|G|1354
7NRD|1|LA|A|1355
7NRD|1|LA|U|1356
7NRD|1|LA|G|1357
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LH
- 60S ribosomal protein L6-B
- Chain LS
- 60S ribosomal protein L18-A
- Chain Lg
- 60S ribosomal protein L32
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