HL_7NRD_032

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7NRD|1|LA|G|1507, 7NRD|1|LA|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_032 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.198

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7NRD|1|LA|A|1506
7NRD|1|LA|G|1507
7NRD|1|LA|C|1508
7NRD|1|LA|A|1509
7NRD|1|LA|G|1510
7NRD|1|LA|U|1511
7NRD|1|LA|U|1512

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LR

60S ribosomal protein L17-A

Chain LT

60S ribosomal protein L19-A

Chain Ln

60S ribosomal protein L39