HL_7NRD_039

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

7NRD|1|LA|C|1762, 7NRD|1|LA|U|1764

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_039 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.3761

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7NRD|1|LA|C|1759
7NRD|1|LA|A|1760
7NRD|1|LA|C|1761
7NRD|1|LA|C|1762
7NRD|1|LA|U|1763
7NRD|1|LA|U|1764
7NRD|1|LA|U|1765
7NRD|1|LA|G|1766

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain LW

60S ribosomal protein L22-A

Chain LZ

60S ribosomal protein L25