HL_7NRD_043

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7NRD|1|LA|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_043 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1542

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

7NRD|1|LA|C|1923
7NRD|1|LA|U|1924
7NRD|1|LA|U|1925
7NRD|1|LA|C|1926
7NRD|1|LA|G|1927
7NRD|1|LA|G|1928

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lp

60S ribosomal protein L41-B

Chain Lr

60S ribosomal protein L43-A

Chain S2

Small subunit ribosomal RNA; SSU rRNA