HL_7NRD_051

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7NRD|1|LA|A|2372, 7NRD|1|LA|A|2373, 7NRD|1|LA|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_051 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1539

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7NRD|1|LA|G|2369
7NRD|1|LA|G|2370
7NRD|1|LA|G|2371
7NRD|1|LA|A|2372
7NRD|1|LA|A|2373
7NRD|1|LA|C|2374
7NRD|1|LA|G|2375
7NRD|1|LA|G|2376
7NRD|1|LA|G|2377
7NRD|1|LA|C|2378

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lg

60S ribosomal protein L32