HL_7NRD_054

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_054 not in the Motif Atlas

Homologous match to HL_9PN5_051

Geometric discrepancy: 0.5427

The information below is about HL_9PN5_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56131.4

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7NRD|1|LA|C|2568
7NRD|1|LA|A|2569
7NRD|1|LA|U|2570
7NRD|1|LA|U|2571
7NRD|1|LA|C|2572
7NRD|1|LA|G|2573

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lb

60S ribosomal protein L27-A