HL_7NRD_081

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7NRD|1|S2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_081 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2419

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NRD|1|S2|G|154
7NRD|1|S2|U|155
7NRD|1|S2|A|156
7NRD|1|S2|A|157
7NRD|1|S2|U|158
7NRD|1|S2|U|159
7NRD|1|S2|C|160

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain ST

40S ribosomal protein S6-A

Chain Sd

40S ribosomal protein S24-A