HL_7NRD_087
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_087 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1979
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7NRD|1|S2|U|368
7NRD|1|S2|A|369
7NRD|1|S2|A|370
7NRD|1|S2|G|371
7NRD|1|S2|G|372
7NRD|1|S2|G|373
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SR
- 40S ribosomal protein S2
- Chain SW
- 40S ribosomal protein S9-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Sc
- 40S ribosomal protein S23-A
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