HL_7NRD_088
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 7NRD|1|S2|C|402, 7NRD|1|S2|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_088 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1365
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|C|393
7NRD|1|S2|C|394
7NRD|1|S2|U|395
7NRD|1|S2|G|396
7NRD|1|S2|A|397
7NRD|1|S2|G|398
7NRD|1|S2|A|399
7NRD|1|S2|A|400
7NRD|1|S2|A|401
7NRD|1|S2|C|402
7NRD|1|S2|G|403
7NRD|1|S2|G|404
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain Sd
- 40S ribosomal protein S24-A
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