HL_7NRD_111
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 7NRD|1|S2|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_111 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.1746
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7NRD|1|S2|A|1550
7NRD|1|S2|U|1551
7NRD|1|S2|U|1552
7NRD|1|S2|G|1553
7NRD|1|S2|U|1554
7NRD|1|S2|A|1555
7NRD|1|S2|A|1556
7NRD|1|S2|U|1557
7NRD|1|S2|U|1558
7NRD|1|S2|A|1559
7NRD|1|S2|U|1560
7NRD|1|S2|U|1561
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SE
- 40S ribosomal protein S15
- Chain SH
- 40S ribosomal protein S18-A
- Chain SI
- 40S ribosomal protein S19-A
- Chain SM
- 40S ribosomal protein S29-A
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