HL_7NWG_007

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

7NWG|1|51|U|224, 7NWG|1|51|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_007 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.4462

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7NWG|1|51|C|222
7NWG|1|51|G|223
7NWG|1|51|U|224
7NWG|1|51|G|225
7NWG|1|51|G|226

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Y3

Ribosomal protein L26