HL_7NWG_022

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

7NWG|1|51|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_022 not in the Motif Atlas

Homologous match to HL_8C3A_018

Geometric discrepancy: 0.5241

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

7NWG|1|51|G|1479
7NWG|1|51|C|1480
7NWG|1|51|C|1481
7NWG|1|51|G|1482
7NWG|1|51|C|1483
7NWG|1|51|G|1484
7NWG|1|51|C|1485
7NWG|1|51|C|1486

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain L3

L13

Chain i3

60S ribosomal protein L36