HL_7NWG_026

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7NWG|1|51|C|1676, 7NWG|1|51|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_026 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.431

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7NWG|1|51|C|1675
7NWG|1|51|C|1676
7NWG|1|51|U|1677
7NWG|1|51|C|1678
7NWG|1|51|A|1679
7NWG|1|51|G|1680

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain a3

uL15

Chain b3

eL29

Chain o3

eL42