HL_7NWG_029

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGUAAGCA

Length

9 nucleotides

Bulged bases

7NWG|1|51|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_029 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.314

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7NWG|1|51|U|1863
7NWG|1|51|G|1864
7NWG|1|51|G|1865
7NWG|1|51|U|1866
7NWG|1|51|A|1867
7NWG|1|51|A|1868
7NWG|1|51|G|1869
7NWG|1|51|C|1870
7NWG|1|51|A|1871

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain b3

eL29