HL_7NWG_032

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_032 not in the Motif Atlas

Geometric match to HL_4WF9_004

Geometric discrepancy: 0.37

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

7NWG|1|51|U|2006
7NWG|1|51|G|2007
7NWG|1|51|U|2008
7NWG|1|51|A|2009
7NWG|1|51|A|2010
7NWG|1|51|C|2011
7NWG|1|51|A|2012
7NWG|1|51|A|2013

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain t3

60S acidic ribosomal protein P0

Chain u3

uL12