HL_7NWG_043

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_043 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5398

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7NWG|1|51|G|2664
7NWG|1|51|U|2665
7NWG|1|51|U|2666
7NWG|1|51|C|2667
7NWG|1|51|G|2668
7NWG|1|51|C|2669
7NWG|1|51|C|2670

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain R3

60S ribosomal protein L19

Chain p3

ribosomal protein eL43