HL_7NWG_049

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

7NWG|1|51|G|3615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_049 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.3335

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7NWG|1|51|G|3614
7NWG|1|51|G|3615
7NWG|1|51|U|3616
7NWG|1|51|G|3617
7NWG|1|51|C|3618

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain R3

60S ribosomal protein L19

Chain W

60S ribosomal protein L24-like protein