HL_7NWG_066

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7NWG|1|51|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_066 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1932

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7NWG|1|51|A|4474
7NWG|1|51|G|4475
7NWG|1|51|C|4476
7NWG|1|51|A|4477
7NWG|1|51|G|4478
7NWG|1|51|A|4479
7NWG|1|51|A|4480
7NWG|1|51|U|4481

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain H3

L9

Chain m3

60S RIBOSOMAL PROTEIN EL40