3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAGCUAGCUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NWG_078 not in the Motif Atlas
Geometric match to HL_7RQB_001
Geometric discrepancy: 0.2353
The information below is about HL_7RQB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_99167.2
Basepair signature
cWW-F-F-cSH-F-F
Number of instances in this motif group
6

Unit IDs

7NWG|1|81|C|47
7NWG|1|81|A|48
7NWG|1|81|G|49
7NWG|1|81|C|50
7NWG|1|81|U|51
7NWG|1|81|A|52
7NWG|1|81|G|53
7NWG|1|81|C|54
7NWG|1|81|U|55
7NWG|1|81|G|56

Current chains

Chain 81
5.8S Ribosomal RNA

Nearby chains

Chain 51
Large subunit ribosomal RNA; LSU rRNA
Chain X3
uL23
Chain h3
uL29
Chain j3
Ribosomal protein L37
Chain l3
eL39

Coloring options:


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