HL_7NWG_078
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NWG_078 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.2353
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
7NWG|1|81|C|47
7NWG|1|81|A|48
7NWG|1|81|G|49
7NWG|1|81|C|50
7NWG|1|81|U|51
7NWG|1|81|A|52
7NWG|1|81|G|53
7NWG|1|81|C|54
7NWG|1|81|U|55
7NWG|1|81|G|56
Current chains
- Chain 81
- 5.8S Ribosomal RNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain X3
- uL23
- Chain h3
- uL29
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
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