HL_7NWG_084

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7NWG|1|A2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_084 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2271

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NWG|1|A2|G|156
7NWG|1|A2|U|157
7NWG|1|A2|A|158
7NWG|1|A2|A|159
7NWG|1|A2|U|160
7NWG|1|A2|U|161
7NWG|1|A2|C|162

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6

Chain Z2

40S ribosomal protein S24