HL_7NWG_088

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7NWG|1|A2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_088 not in the Motif Atlas

Geometric match to HL_5WWT_001

Geometric discrepancy: 0.3154

The information below is about HL_5WWT_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

7NWG|1|A2|G|377
7NWG|1|A2|U|378
7NWG|1|A2|C|379
7NWG|1|A2|G|380
7NWG|1|A2|C|381
7NWG|1|A2|C|382
7NWG|1|A2|G|383
7NWG|1|A2|U|384
7NWG|1|A2|G|385
7NWG|1|A2|C|386
7NWG|1|A2|C|387

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain J2

40S ribosomal protein S8

Chain M2

40S ribosomal protein S11