HL_7NWG_093

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

7NWG|1|A2|U|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_093 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3387

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NWG|1|A2|U|538
7NWG|1|A2|C|539
7NWG|1|A2|U|540
7NWG|1|A2|U|541
7NWG|1|A2|U|542
7NWG|1|A2|C|543
7NWG|1|A2|G|544
7NWG|1|A2|A|545

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains