HL_7NWG_098

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7NWG|1|A2|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_098 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.5942

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NWG|1|A2|C|884
7NWG|1|A2|U|885
7NWG|1|A2|A|886
7NWG|1|A2|U|887
7NWG|1|A2|U|888
7NWG|1|A2|U|889
7NWG|1|A2|U|890
7NWG|1|A2|G|891
7NWG|1|A2|U|892
7NWG|1|A2|U|893
7NWG|1|A2|G|894
7NWG|1|A2|G|895
7NWG|1|A2|U|896
7NWG|1|A2|U|897
7NWG|1|A2|U|898
7NWG|1|A2|U|899
7NWG|1|A2|C|900
7NWG|1|A2|G|901
7NWG|1|A2|G|902

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6