HL_7NWG_101

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_101 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.2406

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7NWG|1|A2|G|1054
7NWG|1|A2|A|1055
7NWG|1|A2|U|1056
7NWG|1|A2|C|1057
7NWG|1|A2|A|1058
7NWG|1|A2|G|1059
7NWG|1|A2|A|1060
7NWG|1|A2|U|1061
7NWG|1|A2|A|1062
7NWG|1|A2|C|1063
7NWG|1|A2|C|1064

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain P2

uS11

Chain v3

mRNA