HL_7NWG_102

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

7NWG|1|A2|U|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_102 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.354

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7NWG|1|A2|U|1114
7NWG|1|A2|U|1115
7NWG|1|A2|C|1116
7NWG|1|A2|C|1117
7NWG|1|A2|C|1118
7NWG|1|A2|A|1119

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain C2

40S ribosomal protein S3a

Chain c2

40S ribosomal protein S27