HL_7NWG_116

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAGGGUAUCA

Length

12 nucleotides

Bulged bases

7NWG|1|q3|G|18, 7NWG|1|q3|G|19, 7NWG|1|q3|U|20, 7NWG|1|q3|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_116 not in the Motif Atlas

Homologous match to HL_4V9I_038

Geometric discrepancy: 0.5323

The information below is about HL_4V9I_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68572.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7NWG|1|q3|U|11
7NWG|1|q3|G|12
7NWG|1|q3|U|13
7NWG|1|q3|A|14
7NWG|1|q3|G|15
7NWG|1|q3|G|18
7NWG|1|q3|G|19
7NWG|1|q3|U|20
7NWG|1|q3|A|21
7NWG|1|q3|U|22
7NWG|1|q3|C|23
7NWG|1|q3|A|24

Current chains

Chain q3

A/P-Site tRNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain J3

60S ribosomal protein L11