HL_7NWG_118

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_118 not in the Motif Atlas

Homologous match to HL_4V90_034

Geometric discrepancy: 0.3498

The information below is about HL_4V90_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7NWG|1|q3|G|53
7NWG|1|q3|U|54
7NWG|1|q3|U|55
7NWG|1|q3|C|56
7NWG|1|q3|G|57
7NWG|1|q3|A|58
7NWG|1|q3|A|59
7NWG|1|q3|A|60
7NWG|1|q3|C|61

Current chains

Chain q3

A/P-Site tRNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA