HL_7NWG_136

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUUGUUCACCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_136 not in the Motif Atlas

Geometric match to HL_5J7L_216

Geometric discrepancy: 0.3965

The information below is about HL_5J7L_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78284.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NWG|1|51|G|4494
7NWG|1|51|G|4495
7NWG|1|51|A|4496
7NWG|1|51|U|4497
7NWG|1|51|U|4498
7NWG|1|51|G|4499
7NWG|1|51|U|4500
7NWG|1|51|U|4501
7NWG|1|51|C|4502
7NWG|1|51|A|4503
7NWG|1|51|C|4504
7NWG|1|51|C|4505
7NWG|1|51|C|4506

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

eL14