HL_7NWG_144

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAGCCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_144 not in the Motif Atlas

Geometric match to HL_7LYF_001

Geometric discrepancy: 0.3874

The information below is about HL_7LYF_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7NWG|1|A2|G|617
7NWG|1|A2|C|618
7NWG|1|A2|A|619
7NWG|1|A2|G|620
7NWG|1|A2|C|621
7NWG|1|A2|C|622
7NWG|1|A2|G|623
7NWG|1|A2|C|624

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain Y2

Ribosomal protein S23

Chain f2

40S ribosomal protein S30

Chain v3

mRNA