HL_7NWH_021

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

7NWH|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_021 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3478

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7NWH|1|5|G|1479
7NWH|1|5|C|1480
7NWH|1|5|C|1481
7NWH|1|5|G|1482
7NWH|1|5|C|1483
7NWH|1|5|G|1484
7NWH|1|5|C|1485
7NWH|1|5|C|1486

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain i

60S ribosomal protein L36